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Showing :
opencyto gating
•
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0
votes
0
replies
953
views
How to construct a polygon gate?
gating
opencyto gating
6.8 years ago
justinyi10
▴ 10
1
vote
0
replies
692
views
Don't understand what's causing this error
opencyto gating
6.8 years ago
justinyi10
▴ 10
0
votes
1
reply
813
views
Error when gating from gating template
opencyto gating
6.8 years ago
justinyi10
▴ 10
0
votes
0
replies
689
views
Error while gating from gating template
opencyto gating
gating
bioconductor
6.8 years ago
justinyi10
▴ 10
0
votes
0
replies
698
views
Additional populations added when trying to gate from gating template
opencyto gating
6.8 years ago
justinyi10
▴ 10
0
votes
0
replies
615
views
Gating template for monocytes?
opencyto gating
6.8 years ago
justinyi10
▴ 10
0
votes
1
reply
765
views
Trying to read in a gating template causes error
opencyto gating
bioconductor
6.8 years ago
justinyi10
▴ 10
0
votes
0
replies
942
views
Use "gating.template" on data.table
data.table
opencyto gating
csv files
R
6.9 years ago
Rivka
• 0
0
votes
1
reply
1.9k
views
Exporting FCS files from GatingSet
flowcore
opencyto gating
flowset
updated 7.2 years ago by
Jiang, Mike
★ 1.3k • written 7.2 years ago by
jordan.xanthopoulos
• 0
2
votes
1
reply
1.0k
views
openCyto working Example: expects {flowWorkspace} but example
opencyto
bioconductor
opencyto gating
updated 7.3 years ago by
Jiang, Mike
★ 1.3k • written 7.3 years ago by
Rivka
• 0
0
votes
1
reply
2.2k
views
reading an ".xml" file as FlowJo Workspace file
opencyto gating
opencyto
flowcore
flowworkspace
updated 8.0 years ago by
Jiang, Mike
★ 1.3k • written 8.0 years ago by
anara92
• 0
1
vote
1
reply
1.1k
views
OpenCyto -- time gate and border events
opencyto gating
flowcore
flow cytometry
updated 8.0 years ago by
Jiang, Mike
★ 1.3k • written 8.0 years ago by
Ulrik Stervbo
▴ 30
0
votes
2
replies
2.4k
views
OpenCyto -- proper gating of CD45
opencyto gating
flowworkspace
updated 8.0 years ago by
Jiang, Mike
★ 1.3k • written 8.0 years ago by
Ulrik Stervbo
▴ 30
1
vote
0
replies
1.4k
views
OpenCyto - getting the gates correct
opencyto gating
8.0 years ago
Ulrik Stervbo
▴ 30
0
votes
2
replies
1.6k
views
openCyto - how to get the MFI (mean fluorescence intensities)
opencyto gating
updated 8.5 years ago by
Jiang, Mike
★ 1.3k • written 8.5 years ago by
veronikag
• 0
4
votes
8
replies
2.8k
views
openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClust
flowclust
opencyto
opencyto gating
updated 8.4 years ago by
Greg Finak
▴ 240 • written 8.5 years ago by
Viktor Thiel
• 0
5
votes
4
replies
3.1k
views
openCyto: Using combination gates (boolean gates)
opencyto
opencyto gating
FlowJo
updated 9.3 years ago by
Greg Finak
▴ 150 • written 9.3 years ago by
juancamilos
▴ 10
0
votes
5
replies
1.5k
views
openCyto automatic gating:
openCyto gating
9.6 years ago
thomas.mohr
▴ 20
18 results • Page
1 of 1
Recent ...
Replies
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga
by
James W. MacDonald
65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Votes
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
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